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Intron Name: Anas_platyrhynchos_platyrhynchos_3_83796725_83800831_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

83796725 - 83800831

Intron Length:

4107

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGGATA

5'SS Class:

strong_major

3'SS Sequence:

TCTATTTTTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATATGAT

U12 Branch Point Sequence:

TATACAATAACT

Flanking Amino Acid:

MTAPRLGSFSGTTVPALLNS

Intron Amino Acid Position:

1758

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.6

0.82

0.9

80.5

33.7

Major BPS

75.8

0.64

65.8

Major PPT

83.7

0.76

0.8

37.1

Minor 5ss

41.9

-0.9

3.1

56.7

47.6

Minor BPS

58.1

0.33

1.9

81.02

39.5

Associated Gene:

Gene:

CSMD1

Ensembl Gene ID:

ENSAPLG00000002718

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030936

83639896 - 84232372

592477

ENSAPLT00000002822

83639896 - 84232372

592477