Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_83800929_83801532_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

83800929 - 83801532

Intron Length:

604

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CAG|GCAAGTCTA

5'SS Class:

strong_major

3'SS Sequence:

TGGCATTTTACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TTGGTTTTAAAA

Flanking Amino Acid:

IIVTEGSGIQIQVISFATEH

Intron Amino Acid Position:

1726

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

98.1

1.14

0.7

85.1

31.7

Major BPS

90.4

0.7

90.2

19.3

Major PPT

75.5

0.57

68.3

41.9

Minor 5ss

27.5

-2.6

3.9

40.7

45.5

Minor BPS

59.6

0.3

1.5

67.43

39.5

Associated Gene:

Gene:

CSMD1

Ensembl Gene ID:

ENSAPLG00000002718

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030936

83639896 - 84232372

592477

ENSAPLT00000002822

83639896 - 84232372

592477