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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_83801658_83802747_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
83801658 - 83802747
Intron Length:
1090

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TAATTCATAATA
Flanking Amino Acid:
QWNDTVPSCVVPCSGNFTER
Intron Amino Acid Position:
1684

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
87
30
Major BPS
80
0.75
1
78.6
31
Major PPT
86.6
0.82
0.7
84.6
30.4
Minor 5ss
41
-1
2.9
56.9
47.4
Minor BPS
61.9
0.37
1.6
70.24
35.5

Associated Gene:

Gene:
CSMD1
Ensembl Gene ID:
ENSAPLG00000002718
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030936
83639896 - 84232372
592477
ENSAPLT00000002822
83639896 - 84232372
592477