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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_83812184_83814968_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
83812184 - 83814968
Intron Length:
2785

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TATTTAAATGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTAAAT
Flanking Amino Acid:
HYSITVPKEFVVFGQFAYFQ
Intron Amino Acid Position:
1546

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.8
86.3
28.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
70
0.45
1
64.9
40.2
Minor 5ss
39.6
-1.2
3.2
55.5
42.8
Minor BPS
68.9
0.67
1.5
84.9
34.8

Associated Gene:

Gene:
CSMD1
Ensembl Gene ID:
ENSAPLG00000002718
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030936
83639896 - 84232372
592477
ENSAPLT00000002822
83639896 - 84232372
592477