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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_83823904_83827364_R

Intron Information:

Intron Rank:
28
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
83823904 - 83827364
Intron Length:
3461

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCGTTC
5'SS Class:
weak_major
3'SS Sequence:
TTCATTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTCATTTTAACA
Flanking Amino Acid:
GMSGFAIDYKEKPREACFDP
Intron Amino Acid Position:
1442

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.47
1.2
66.5
40
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
80.2
0.68
0.9
76.7
36.1
Minor 5ss
60.3
0.35
2.7
76
40.1
Minor BPS
70.7
0.65
1.2
75.15
36.6

Associated Gene:

Gene:
CSMD1
Ensembl Gene ID:
ENSAPLG00000002718
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030936
83639896 - 84232372
592477
ENSAPLT00000002822
83639896 - 84232372
592477