Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_83827553_83829857_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

83827553 - 83829857

Intron Length:

2305

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACAAGTT

5'SS Class:

major

3'SS Sequence:

CCTTTATTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACTTAAT

U12 Branch Point Sequence:

TTTTCCTTTATT

Flanking Amino Acid:

PDFVIALIFKSFNMEPSYDF

Intron Amino Acid Position:

1379

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.3

0.57

72.5

37.2

Major BPS

78.2

0.7

77.9

32.1

Major PPT

86.8

0.83

0.7

84.5

29.1

Minor 5ss

34.6

-1.7

3.8

55.8

48.4

Minor BPS

81.6

1.08

1.4

96.2

29.4

Associated Gene:

Gene:

CSMD1

Ensembl Gene ID:

ENSAPLG00000002718

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030936

83639896 - 84232372

592477

ENSAPLT00000002822

83639896 - 84232372

592477