About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8383225_8385778_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8383225 - 8385778
Intron Length:
2554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTGCCTTTTATT
Flanking Amino Acid:
LDIELALSDHGMEIITGKAR
Intron Amino Acid Position:
1049

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
86.1
24.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
85
0.79
0.9
76.9
42.1
Minor 5ss
44.3
-0.6
2.9
62.8
42
Minor BPS
61
0.43
1.6
76.99
39.9

Associated Gene:

Gene:
CFAP61
Ensembl Gene ID:
ENSAPLG00000013456
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014012
8383015 - 8465019
82005