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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_83845140_83849552_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
83845140 - 83849552
Intron Length:
4413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATATGG
5'SS Class:
major
3'SS Sequence:
ATTTATTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CAATCCTTATTT
Flanking Amino Acid:
VWDKPLPACIAECGGRIHAA
Intron Amino Acid Position:
1159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
65.3
41.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.7
0.74
0.8
78
35.5
Minor 5ss
37.4
-1.4
3
48.1
47.4
Minor BPS
63.7
0.51
1.6
73.94
43

Associated Gene:

Gene:
CSMD1
Ensembl Gene ID:
ENSAPLG00000002718
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030936
83639896 - 84232372
592477
ENSAPLT00000002822
83639896 - 84232372
592477