About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8385871_8386627_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8385871 - 8386627
Intron Length:
757

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCATTTATGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
GTTTCATTTATG
Flanking Amino Acid:
IPMYKGCKIKGGVLPRGCNY
Intron Amino Acid Position:
1018

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
79.4
28.9
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
72.8
0.51
1
69.9
40
Minor 5ss
38.1
-1.3
3.1
48.5
47.7
Minor BPS
54.5
-0
2
65.61
41.9

Associated Gene:

Gene:
CFAP61
Ensembl Gene ID:
ENSAPLG00000013456
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014012
8383015 - 8465019
82005