Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_83896820_83898409_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

83896820 - 83898409

Intron Length:

1590

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGATAT

5'SS Class:

strong_major

3'SS Sequence:

TTATTGTCTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTACAT

U12 Branch Point Sequence:

TATTACATACTA

Flanking Amino Acid:

SYEGFNITFSEYDLEPCDDP

Intron Amino Acid Position:

923

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.1

1.02

0.7

86.8

22.9

Major BPS

73.9

0.59

30.2

Major PPT

82.8

0.74

0.9

77.5

36.6

Minor 5ss

39.6

-1.2

3.1

55.7

48.5

Minor BPS

48.7

-0.1

66.67

39.5

Associated Gene:

Gene:

CSMD1

Ensembl Gene ID:

ENSAPLG00000002718

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030936

83639896 - 84232372

592477

ENSAPLT00000002822

83639896 - 84232372

592477