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Intron Name: Anas_platyrhynchos_platyrhynchos_3_83922386_83926743_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

83922386 - 83926743

Intron Length:

4358

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGGCA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTCTTCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTTTTTTATT

Flanking Amino Acid:

VWSSAVPRCEAPCGGHLTAS

Intron Amino Acid Position:

640

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.3

0.93

0.9

75.8

33.8

Major BPS

96.5

1.15

0.6

34.2

Major PPT

95.5

1.02

0.5

88.9

28.1

Minor 5ss

29.5

-2.3

3.4

38.8

46.5

Minor BPS

69.2

0.69

1.5

86.8

32.8

Associated Gene:

Gene:

CSMD1

Ensembl Gene ID:

ENSAPLG00000002718

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030936

83639896 - 84232372

592477

ENSAPLT00000002822

83639896 - 84232372

592477