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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_83953033_83956373_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
83953033 - 83956373
Intron Length:
3341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
ATCCTACATGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTTATCCTACAT
Flanking Amino Acid:
KVGDTRTVLYVLTGSSVPDL
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
73.6
37
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
69.9
0.45
1
63.3
36.9
Minor 5ss
38
-1.4
2.7
44.7
42.7
Minor BPS
48.2
-0
2
74.47
41.9

Associated Gene:

Gene:
CSMD1
Ensembl Gene ID:
ENSAPLG00000002718
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030936
83639896 - 84232372
592477
ENSAPLT00000002822
83639896 - 84232372
592477