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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8397195_8398495_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8397195 - 8398495
Intron Length:
1301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATTG
5'SS Class:
strong_major
3'SS Sequence:
TCATTTGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TATTCATTCATT
Flanking Amino Acid:
LVLCTGQKYQVLSPTGADIT
Intron Amino Acid Position:
753

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.99
0.8
81.6
33.2
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
80.7
0.69
0.9
72.7
42.1
Minor 5ss
41.6
-0.9
3.1
55.7
48.5
Minor BPS
60.5
0.41
2
82.44
38.8

Associated Gene:

Gene:
CFAP61
Ensembl Gene ID:
ENSAPLG00000013456
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014012
8383015 - 8465019
82005