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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8398665_8401331_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8398665 - 8401331
Intron Length:
2667

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGATTT
5'SS Class:
major
3'SS Sequence:
TTTTTCTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAGAT
U12 Branch Point Sequence:
TTTTTCTTCACA
Flanking Amino Acid:
ASKHRRFLINSHCFNDEDYA
Intron Amino Acid Position:
696

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
75.4
34.8
Major BPS
66.3
0.41
1
61
37.5
Major PPT
91.6
0.94
0.6
87.6
22.6
Minor 5ss
46.3
-0.4
2.8
65.6
45.6
Minor BPS
75.4
0.79
1.7
86.69
32.1

Associated Gene:

Gene:
CFAP61
Ensembl Gene ID:
ENSAPLG00000013456
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014012
8383015 - 8465019
82005