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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8401431_8416343_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8401431 - 8416343
Intron Length:
14913

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
ATTGGTTTAACT
Flanking Amino Acid:
GISFLETLVFCPHLKFNNLT
Intron Amino Acid Position:
663

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
89.6
24.1
Major BPS
73.9
0.59
1
81
30.2
Major PPT
87.8
0.85
0.6
83.8
24.5
Minor 5ss
46.3
-0.4
2.8
64.1
41.5
Minor BPS
63.8
0.51
1.9
81.74
40.3

Associated Gene:

Gene:
CFAP61
Ensembl Gene ID:
ENSAPLG00000013456
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014012
8383015 - 8465019
82005