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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_84088239_84217093_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
84088239 - 84217093
Intron Length:
128855

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACAAAT
U12 Branch Point Sequence:
CATGACAAATCT
Flanking Amino Acid:
EISGTEAPSIWLTGMNLPSP
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
75.9
35.2
Major BPS
51.7
0.04
1.2
59.2
35.9
Major PPT
100
1.12
0.4
100
0
Minor 5ss
33.7
-1.9
2.9
38
41
Minor BPS
38
-0.8
2.2
54.72
46.5

Associated Gene:

Gene:
CSMD1
Ensembl Gene ID:
ENSAPLG00000002718
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030936
83639896 - 84232372
592477
ENSAPLT00000002822
83639896 - 84232372
592477