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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8431418_8434115_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8431418 - 8434115
Intron Length:
2698

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAAGG
5'SS Class:
major
3'SS Sequence:
CTCTGTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAGAT
U12 Branch Point Sequence:
CTCTACTGAAAT
Flanking Amino Acid:
PIYPQYTEAKFQNPRAHSLT
Intron Amino Acid Position:
576

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.3
42.6
Major BPS
71.4
0.53
1
67
39.8
Major PPT
83.2
0.75
0.8
80.3
31.8
Minor 5ss
32.9
-1.9
2.9
40.9
44.9
Minor BPS
53.1
0.18
1.8
71.24
45

Associated Gene:

Gene:
CFAP61
Ensembl Gene ID:
ENSAPLG00000013456
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014012
8383015 - 8465019
82005