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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8434323_8435470_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8434323 - 8435470
Intron Length:
1148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTACTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
AGTTTCTTACTT
Flanking Amino Acid:
VGISVIRDEMDIEYIRTHYN
Intron Amino Acid Position:
507

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
76.5
32.9
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
85.4
0.8
0.8
77
36.9
Minor 5ss
42.3
-0.8
2.9
56.2
43.3
Minor BPS
65
0.55
1.6
78.48
38.1

Associated Gene:

Gene:
CFAP61
Ensembl Gene ID:
ENSAPLG00000013456
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014012
8383015 - 8465019
82005