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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8436145_8439765_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8436145 - 8439765
Intron Length:
3621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTTAATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
TCTTTTTTAATA
Flanking Amino Acid:
LYVFHRAGLLKSFTVRRATT
Intron Amino Acid Position:
438

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
0.9
76.8
33.7
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
82.8
0.74
0.8
81
29.6
Minor 5ss
32.2
-2
3
41.4
39.1
Minor BPS
76
0.81
1.1
78
33.3

Associated Gene:

Gene:
CFAP61
Ensembl Gene ID:
ENSAPLG00000013456
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014012
8383015 - 8465019
82005