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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8439906_8441089_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8439906 - 8441089
Intron Length:
1184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTACGTATA
5'SS Class:
major
3'SS Sequence:
CAAATGTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTATAT
U12 Branch Point Sequence:
TTCTCTGCAAAT
Flanking Amino Acid:
FLHYVFKLFPDKDFCIILVP
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.1
72.3
39.1
Major BPS
66.7
0.41
1.1
63.2
42.8
Major PPT
70.2
0.46
1
65.5
44.8
Minor 5ss
40.4
-1.1
3
56.2
42.2
Minor BPS
48
-0
2.3
73.05
44

Associated Gene:

Gene:
CFAP61
Ensembl Gene ID:
ENSAPLG00000013456
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014012
8383015 - 8465019
82005