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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8441130_8443480_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8441130 - 8443480
Intron Length:
2351

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTGGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATGTAATA
Flanking Amino Acid:
LFCIDEKYETRSLDFLHYVF
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78
0.63
0.9
71.9
38
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
56.3
0.19
2.1
75.77
36

Associated Gene:

Gene:
CFAP61
Ensembl Gene ID:
ENSAPLG00000013456
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014012
8383015 - 8465019
82005