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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8443669_8446802_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8443669 - 8446802
Intron Length:
3134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATACCC
5'SS Class:
major
3'SS Sequence:
CTTATTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTTTTCTTATTC
Flanking Amino Acid:
CISDQDAAVQKGELTTISHP
Intron Amino Acid Position:
316

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.68
1
65.3
38.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
86.2
0.81
0.8
80.8
31.1
Minor 5ss
33.3
-1.9
3
43.9
43.3
Minor BPS
65.7
0.47
1.6
73.26
38.6

Associated Gene:

Gene:
CFAP61
Ensembl Gene ID:
ENSAPLG00000013456
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014012
8383015 - 8465019
82005