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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8466104_8470027_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8466104 - 8470027
Intron Length:
3924

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGCA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTTTACTT
Flanking Amino Acid:
LNDYKLRKRKTFEDNIRKNR
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
0.9
71.1
32.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
89.5
0.89
0.7
88.7
27.5
Minor 5ss
30.1
-2.3
3.3
39.5
45.9
Minor BPS
70.1
0.71
1.5
86.64
33.8

Associated Gene:

Gene:
CRNKL1
Ensembl Gene ID:
ENSAPLG00000013105
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013674
8465697 - 8480136
14440