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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8470120_8470225_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8470120 - 8470225
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTATG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
CACAACTAAACT
Flanking Amino Acid:
QWEESLKEIQRARSIYERAL
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
83.7
34.8
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
85.3
0.8
0.8
76.7
37.4
Minor 5ss
39.4
-1.2
2.8
51.2
45.3
Minor BPS
48
-0
1.9
62.69
46.8

Associated Gene:

Gene:
CRNKL1
Ensembl Gene ID:
ENSAPLG00000013105
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013674
8465697 - 8480136
14440