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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8473305_8474011_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8473305 - 8474011
Intron Length:
707

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
CCTGTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAG
U12 Branch Point Sequence:
CTGTTCTTACAG
Flanking Amino Acid:
YALYEELEAKDPERTRQVYQ
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.3
1.16
0.7
92
25.2
Major BPS
64.7
0.37
1.5
63.7
43.9
Major PPT
82.1
0.72
0.8
75.6
33
Minor 5ss
27.1
-2.6
3.8
42.5
44.3
Minor BPS
49.7
-0.1
1.8
55.5
46

Associated Gene:

Gene:
CRNKL1
Ensembl Gene ID:
ENSAPLG00000013105
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013674
8465697 - 8480136
14440