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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8478135_8478566_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8478135 - 8478566
Intron Length:
432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTGAA
U12 Branch Point Sequence:
AGGCTGTGAATG
Flanking Amino Acid:
IGQPRLDMPEVLWKSYIDFE
Intron Amino Acid Position:
515

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
67.8
43.5
Major BPS
69.4
0.48
1.2
63.4
44.3
Major PPT
88.6
0.87
0.7
83.9
31.1
Minor 5ss
28.6
-2.5
3.5
37.8
47.1
Minor BPS
40.7
-0.8
2
40.34
37.6

Associated Gene:

Gene:
CRNKL1
Ensembl Gene ID:
ENSAPLG00000013105
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013674
8465697 - 8480136
14440