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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8478669_8479261_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8478669 - 8479261
Intron Length:
593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTCAGA
5'SS Class:
major
3'SS Sequence:
TTTTGTGCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCACCTTGATT
Flanking Amino Acid:
RLLQRTQHVKVWISFAQFEL
Intron Amino Acid Position:
549

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
61.9
44.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
78.2
0.63
0.9
72.5
37.8
Minor 5ss
37.7
-1.4
3
49.7
46.1
Minor BPS
73.6
0.82
1.2
83.79
37.4

Associated Gene:

Gene:
CRNKL1
Ensembl Gene ID:
ENSAPLG00000013105
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013674
8465697 - 8480136
14440