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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_84965790_85013734_R

Intron Information:

Intron Rank:
154376
Intron Class:
major
Intron Phase:
Intron Coordinates:
84965790 - 85013734
Intron Length:
47945

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCTTCCTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.9
0.7
0.8
77
30.2
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
91.1
1.29
0.8
91.36
30.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030573
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045497
84952682 - 85117733
165052