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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85013798_85117375_R

Intron Information:

Intron Rank:
154377
Intron Class:
major
Intron Phase:
Intron Coordinates:
85013798 - 85117375
Intron Length:
103578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGCAAA
5'SS Class:
major
3'SS Sequence:
TTCTTTCTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTGTCTTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
75.3
36.2
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
79.3
0.66
0.9
81.2
30.9
Minor 5ss
35.1
-1.7
2.7
40.3
45.5
Minor BPS
68.7
0.67
1.6
83.31
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030573
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045497
84952682 - 85117733
165052