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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85309954_85314172_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
85309954 - 85314172
Intron Length:
4219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
ATTTATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
ATTTATTTTACA
Flanking Amino Acid:
VKIVSVLWVEKCRETGIHVD
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
77.7
30.1
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
86.7
0.82
0.8
80.6
36.1
Minor 5ss
33.3
-1.9
2.7
38.5
32.5
Minor BPS
60.4
0.32
1.8
74.55
36.3

Associated Gene:

Gene:
MCPH1
Ensembl Gene ID:
ENSAPLG00000018704
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035346
85307439 - 85427443
120005