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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85314948_85315233_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85314948 - 85315233
Intron Length:
286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTGTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CAAATATTAATG
Flanking Amino Acid:
LAKQKIGINAETDTPVLLFD
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
83.1
0.75
0.8
80.8
31.2
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
47.3
-0.3
1.7
46.99
39.9

Associated Gene:

Gene:
MCPH1
Ensembl Gene ID:
ENSAPLG00000018704
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035346
85307439 - 85427443
120005