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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85315375_85317192_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85315375 - 85317192
Intron Length:
1818

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TATAAACTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATAAACT
Flanking Amino Acid:
KEKRENLSPTASQMSQTPPR
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
77.2
37.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
62.3
0.28
1
52.2
42.2
Minor 5ss
35.3
-1.7
3.1
46.5
42.9
Minor BPS
60.6
0.41
1.9
82.01
39.1

Associated Gene:

Gene:
MCPH1
Ensembl Gene ID:
ENSAPLG00000018704
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035346
85307439 - 85427443
120005