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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85325632_85346798_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85325632 - 85346798
Intron Length:
21167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TCATTTATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATTTATT
Flanking Amino Acid:
GVKKTRRLQKVLWSFEAGHW
Intron Amino Acid Position:
563

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
1.2
84.1
30.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
79.4
0.66
0.8
78.2
34.7
Minor 5ss
39.2
-1.2
2.8
50
46.3
Minor BPS
62.9
0.49
1.9
83.69
36.7

Associated Gene:

Gene:
MCPH1
Ensembl Gene ID:
ENSAPLG00000018704
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035346
85307439 - 85427443
120005