Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85346877_85426849_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

85346877 - 85426849

Intron Length:

79973

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCT|GTAAGTTTG

5'SS Class:

major

3'SS Sequence:

TCCTCACTTACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATCAT

U12 Branch Point Sequence:

GTTTCCTCACTT

Flanking Amino Acid:

ELSSNFPAAPICRLQRHLST

Intron Amino Acid Position:

589

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.5

0.6

1.1

72.1

40.1

Major BPS

88.2

0.95

0.9

88.3

28.5

Major PPT

79.5

0.66

0.8

72.6

31.1

Minor 5ss

46.7

-0.3

2.8

68.2

42.5

Minor BPS

61.8

0.45

1.8

81.06

40.8

Associated Gene:

Gene:

MCPH1

Ensembl Gene ID:

ENSAPLG00000018704

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035346

85307439 - 85427443

120005