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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85352973_85356405_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
85352973 - 85356405
Intron Length:
3433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TGTTTTTCCATT
Flanking Amino Acid:
FYLANEEQKYRIHLKGLTGT
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
85
0.79
0.7
80.2
25.2
Minor 5ss
38.8
-1.3
2.8
48.8
47
Minor BPS
48.9
-0
1.9
71.95
39.8

Associated Gene:

Gene:
ANGPT2
Ensembl Gene ID:
ENSAPLG00000005668
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005903
85350952 - 85395176
44225