About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85356573_85357079_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85356573 - 85357079
Intron Length:
507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAACGAT
5'SS Class:
major
3'SS Sequence:
ACTTGAATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
AATTATTTAAAT
Flanking Amino Acid:
FHRTWKDYKMGFGDPAGEYW
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
67.4
37.9
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
71.3
0.48
1
62.7
41.7
Minor 5ss
37.5
-1.4
3.5
51.8
47.3
Minor BPS
63.9
0.51
1.6
78.26
37.2

Associated Gene:

Gene:
ANGPT2
Ensembl Gene ID:
ENSAPLG00000005668
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005903
85350952 - 85395176
44225