About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85357182_85364810_R


Intron Information:

Intron Rank:
5

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
85357182 - 85364810

Intron Length:
7629

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTAGGATGG

5'SS Class:
major

3'SS Sequence:
CTTACTCTGATAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TACTTAC

U12 Branch Point Sequence:
ACTGCATGAACT

Flanking Amino Acid:
TVPNTAQEKKAYCDMETNGG

Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
79.2
0.69
1
63.4
43.8

Major BPS
73.7
0.59
0.9
63.6
35.1

Major PPT
68.9
0.42
1
65.1
36.2

Minor 5ss
35.9
-1.6
3.3
47.1
48.3

Minor BPS
53.6
0.19
1.9
72.58
43.9

Associated Gene:

Gene:
ANGPT2

Ensembl Gene ID:

Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

85350952 - 85395176
44225