About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85369320_85371463_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85369320 - 85371463
Intron Length:
2144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
AAATTTTATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATAAATT
Flanking Amino Acid:
TRKLTDVEAQVLNQTTRLEL
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
69.4
0.44
1
67.6
42.8
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
61.6
0.44
1.9
84.39
36.6

Associated Gene:

Gene:
ANGPT2
Ensembl Gene ID:
ENSAPLG00000005668
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005903
85350952 - 85395176
44225