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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8543314_8573902_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8543314 - 8573902
Intron Length:
30589

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGGACG
5'SS Class:
major
3'SS Sequence:
TTGTTTGTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
TCTCACTGATTT
Flanking Amino Acid:
PAASRVTQARGYDALSFSVE
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
63.1
43
Major BPS
71.2
0.53
1
61
37.5
Major PPT
81.9
0.72
0.9
81.2
36.5
Minor 5ss
26.7
-2.7
2.9
23.8
36.7
Minor BPS
47.5
-0.1
1.9
67.42
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024100
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027548
8543016 - 8664962
121947