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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85477347_85477564_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85477347 - 85477564
Intron Length:
218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTGTT
5'SS Class:
major
3'SS Sequence:
TTTGTCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAC
U12 Branch Point Sequence:
ACTGGTTTAACT
Flanking Amino Acid:
VIYLSNHQCTVDWIIADMLA
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
79.1
34.5
Major BPS
71.9
0.54
1.2
75.6
36.6
Major PPT
86.7
0.82
0.7
81.5
30.6
Minor 5ss
41.1
-1
3.1
58.6
46
Minor BPS
57.5
0.32
1.9
73.4
44.1

Associated Gene:

Gene:
AGPAT5
Ensembl Gene ID:
ENSAPLG00000005525
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005746
85459371 - 85515462
56092