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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85477681_85483462_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85477681 - 85483462
Intron Length:
5782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTGTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTTCTTTCTT
Flanking Amino Acid:
LPLYGWYFSQHGGVYVKRSA
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
71.6
40.2
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
80.2
0.68
0.9
81.7
30.3
Minor 5ss
38.2
-1.3
3
48.7
47
Minor BPS
46
-0.2
3.6
83.03
38.5

Associated Gene:

Gene:
AGPAT5
Ensembl Gene ID:
ENSAPLG00000005525
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005746
85459371 - 85515462
56092