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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85483553_85491908_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85483553 - 85491908
Intron Length:
8356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCATCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGCTTTTTCATC
Flanking Amino Acid:
LRTQMKAETSMYLVIFPEGT
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
78.2
32.4
Major BPS
100
1.24
0.5
100
0
Major PPT
79
0.65
0.8
73
31.6
Minor 5ss
42
-0.9
3.1
57.2
46.9
Minor BPS
51.5
0.03
1.7
61.57
38.9

Associated Gene:

Gene:
AGPAT5
Ensembl Gene ID:
ENSAPLG00000005525
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005746
85459371 - 85515462
56092