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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85492000_85499179_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85492000 - 85499179
Intron Length:
7180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
ADSQSFAEKEGLAVLKHVLT
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
83.2
30.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
83.9
0.76
0.6
78.2
30.7
Minor 5ss
38.7
-1.3
2.8
48.1
47.6
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
AGPAT5
Ensembl Gene ID:
ENSAPLG00000005525
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005746
85459371 - 85515462
56092