About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85499342_85513310_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85499342 - 85513310
Intron Length:
13969

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTAAC
U12 Branch Point Sequence:
GTTTCTGTAACT
Flanking Amino Acid:
GQRKLAPSMTEFLCKECPRV
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
80.2
30.7
Major BPS
62.2
0.3
1.2
65
38.7
Major PPT
83.4
0.75
0.8
80.7
31.3
Minor 5ss
34.1
-1.8
2.8
40.8
45.4
Minor BPS
69
0.67
2
88.47
36.7

Associated Gene:

Gene:
AGPAT5
Ensembl Gene ID:
ENSAPLG00000005525
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005746
85459371 - 85515462
56092