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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85555385_85556868_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85555385 - 85556868
Intron Length:
1484

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTCA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TAACATTTGAAT
Flanking Amino Acid:
VGGVVGYTRKGSKISLAAGL
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
80.1
28.4
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
89.8
0.89
0.7
84.9
29.9
Minor 5ss
39.8
-1.1
2.8
50.7
45.7
Minor BPS
48.5
-0
1.6
64.6
39.1

Associated Gene:

Gene:
TMEM14A
Ensembl Gene ID:
ENSAPLG00000005510
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005698
85555299 - 85561508
6210