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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85556971_85559923_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85556971 - 85559923
Intron Length:
2953

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
TTGCCTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTGCCTTTTACA
Flanking Amino Acid:
CDPKNVKISLFSAFLLTLIM
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
78.2
36.4
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
85.1
0.79
0.8
79.7
32.4
Minor 5ss
40.6
-1
3.4
59
45.5
Minor BPS
63
0.4
1.6
72.64
39.2

Associated Gene:

Gene:
TMEM14A
Ensembl Gene ID:
ENSAPLG00000005510
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005698
85555299 - 85561508
6210