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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85560012_85560996_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
85560012 - 85560996
Intron Length:
985

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TTTGTTTTTACA
Flanking Amino Acid:
LMPAGLVACLSLLMILRLVF
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
85.3
32.2
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
92.3
0.95
0.7
87.5
30
Minor 5ss
43.9
-0.7
2.9
60.2
44.5
Minor BPS
60.3
0.32
1.7
74.12
37.8

Associated Gene:

Gene:
TMEM14A
Ensembl Gene ID:
ENSAPLG00000005510
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005698
85555299 - 85561508
6210