Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85563263_85564395_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

85563263 - 85564395

Intron Length:

1133

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAC|GTGAGGAAA

5'SS Class:

major

3'SS Sequence:

CTGGCCTAAGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTTAA

U12 Branch Point Sequence:

ACCTGCTTAAGC

Flanking Amino Acid:

PPADDKYIANVTSVAVLMDV

Intron Amino Acid Position:

225

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.5

0.48

1.3

70.9

36.4

Major BPS

67.1

0.42

1.1

57.7

41.3

Major PPT

60.5

0.24

55.5

39.2

Minor 5ss

27.5

-2.6

29.7

36.3

Minor BPS

50.1

-0

2.1

59.86

45.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005503

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005683

85563224 - 85580320

17097