Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85564495_85565350_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

85564495 - 85565350

Intron Length:

856

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTAGTGAT

5'SS Class:

strong_major

3'SS Sequence:

CTTCTTGTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATAATAT

U12 Branch Point Sequence:

TTCTTGTTACAG

Flanking Amino Acid:

DILSAFPQLQAFKGRISNIP

Intron Amino Acid Position:

192

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.9

0.82

1.1

82.6

29.9

Major BPS

58.7

0.22

1.1

55.4

Major PPT

84.7

0.78

0.8

79.2

32.9

Minor 5ss

30.7

-2.2

3.1

40.9

45.4

Minor BPS

44.7

-0.5

2.3

55.39

46.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005503

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005683

85563224 - 85580320

17097