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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85569404_85570801_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
85569404 - 85570801
Intron Length:
1398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGGTAA
5'SS Class:
major
3'SS Sequence:
TAAAATGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
CAATGCTAAATT
Flanking Amino Acid:
LYGKDLKERAWIDMYVEGTT
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1
66.3
35.2
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
67.3
0.39
1.1
62.3
47.6
Minor 5ss
42.3
-0.9
3.1
51.6
47.5
Minor BPS
48.7
-0
2.1
65.45
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005503
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005683
85563224 - 85580320
17097